Tung Tran

tung.tran at uky.edu
Ph.D. Candidate in Computer Science
University of Kentucky
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Open-source software

  1. Protein-Protein Interaction Extractor 2018 MIT License
    A deep learning based pipeline for extracting protein-protein interactions affected by genetic mutations.
    task source paper
  2. Autumn Named Entity Recognition (NER) 2017 MIT License
    A standalone deep neural network for named entity recognition (NER) based on applying CNNs at the character level and bi-directional LSTMs at the word level.
    source paper
  3. Drug-Drug Interaction (DDI) Extractor 2017 MIT License
    A deep neural network model for relation extraction of DDIs based on applying forward LSTMs at the character level and bi-directional LSTMs at the word level.
    task source paper
  4. Patent Data Harvester and Parser 2017 MIT License
    A system for harvesting full-text patents (and their CPC codes) from the USPTO website and parsing them to a machine-readable JSON format.
    source data paper
  5. Adverse Drug Reaction (ADR) Mention Normalizer 2017 MIT License
    A deep neural model for concept normalization of adverse drug reaction (ADR) mentions.
    task source paper

© Tung Tran 2019