Open-source software

1. Protein-Protein Interaction Extractor 2018 MIT License
   A deep learning based pipeline for extracting protein-protein interactions affected by genetic mutations.
   task source paper
2. Autumn Named Entity Recognition (NER) 2017 MIT License
   A standalone deep neural network for named entity recognition (NER) based on applying CNNs at the character level and bi-directional LSTMs at the word level.
   source paper
3. Drug-Drug Interaction (DDI) Extractor 2017 MIT License
   A deep neural network model for relation extraction of DDIs based on applying forward LSTMs at the character level and bi-directional LSTMs at the word level.
   task source paper
4. Patent Data Harvester and Parser 2017 MIT License
   A system for harvesting full-text patents (and their CPC codes) from the USPTO website and parsing them to a machine-readable JSON format.
   source data paper
5. Adverse Drug Reaction (ADR) Mention Normalizer 2017 MIT License
   A deep neural model for concept normalization of adverse drug reaction (ADR) mentions.
   task source paper